Publications

A.F. Schober, C. Ingle, J.O. Park, L. Chen, J.D. Rabinowitz, I. Junier, O. Rivoire, and K.A. Reynolds. A two-enzyme adaptive unit in bacterial folate metabolism. bioRxiv.

D. Pincus, J. Pandey, P. Creixell, O. Resnekov, and K.A. Reynolds. Evolution and engineering of allosteric regulation in the protein kinases. bioRxiv.

C. Rosensweig, K.A. Reynolds, P. Gao, Y. Shan, R. Ranganathan, J.S. Takahashi, C.B Green. An evolutionary hotspot defines functional differences between CRYPTOCHROMES. Nature Communications(9):1138.[link]

D. Pincus, O. Resnekov, K.A. Reynolds (2017). An evolution-based strategy for engineering allosteric regulation. Physical Biology(14):025002. [link]

C. Narayanan, D. Gagné, K.A. Reynolds, N. Doucet. (2017) Conserved amino acid networks modulate discrete functional properties in an enzyme superfamily. Scientific Reports(7):3207. [link]

O. Rivoire, K.A. Reynolds, R. Ranganathan. (2016) Evolution-based functional decomposition of proteins. PLoS Comp Biol (12): e1004817. [link]

K.A. Reynolds (2015). A new test of computational protein design: predicting posttranslational modification specificity for the enzyme SMYD2. Structure (23): 11-12.[link]

K.A. Reynolds (2014). Finding a common path: predicting gene function using inferred evolutionary trees. Developmental Cell (30): 4-5.[link]

K. Reynolds, Graduate and Postdoctoral Work:

K.A. Reynolds, W. P. Russ, M. Socolich, R. Ranganathan (2013). Evolution based design of proteins. Methods in Enzymology (523): 213-235. [link]

K.A. Reynolds, R.N.McLaughlin, R. Ranganathan (2011). Hotspots for allosteric regulation on protein surfaces. Cell (147): 1564-1575. [link]

M.S. Hanes, K.A. Reynolds, C. McNamara, P. Ghosh, R.A. Bonomo, J.F. Kirsch, T.M. Handel (2011). Specificity and cooperativity at β-lactamase position 104 in TEM-1/BLIP and SHV-1/BLIP interactions. Proteins (73): 1267-1276. [link]

K.A. Reynolds, V. Katritch, R. Abagyan (2010). Structure and modeling of GPCRs: Implications for drug discovery. Molecular Pharmacology and Drug Targeting: Shifting Paradigms and New Directions, Ed. Annette Gilchrist, Chapter 15.

V. Katritch, K.A. Reynolds, V. Cherezov, M.A. Hanson, C.B. Roth, M. Yeager. R. Abagyan (2009). Analysis of full and partial agonists binding to β2-adrenergic receptor suggests a role of transmembrane helix V in agonist-specific conformational changes. J. Molecular Recognition (22): 307-318.[PDF]

K.A. Reynolds, V. Katritch, R. Abagyan (2009). Identifying conformational changes of the β2 adrenoceptor that enable accurate prediction of ligand/receptor interactions and screening for GPCR modulators. Journal of Computer Aided Molecular Design (23): 273-288. [PDF]

K.A. Reynolds, M.S. Hanes, J.M. Thomson, A.J. Antczak, J.M. Berger, R.A. Bonomo, J.F. Kirsch and T.M. Handel (2008). Computational redesign of the SHV-1 β-lactamase/ β-lactamase Inhibitor Protein interface. Journal of Molecular Biology (382): 1265-1275. [link]

A. Chowdry, K.A. Reynolds, M.S. Hanes, M. Voorhies, N. Pokala, and T.M. Handel (2007). An object-oriented Library for Computational Protein Design. Journal of Computational Chemistry (28): 2378-2388. [link]

K.A. Reynolds, J.M Thomson, K.D. Corbett, C.R. Bethel, J.M. Berger, J.F. Kirsch, R.A. Bonomo, and T.M. Handel (2006). Structural and Computational Characterization of the SHV-1 β-lactamase/β-lactamase Inhibitor Protein (BLIP) interface. Journal of Biological Chemistry (281): 26745-26753. [PDF]

S. M. Godzina, M. A. Lovato, M. M. Meyer, K. A. Foster, W. K. Wilson, W. Gu, E. L. de Hostos, and S. P. T. Matsuda (2000). Cloning and characterization of the Dictyostelium discoideum cycloartenol synthase cDNA. Lipids (36): 249-255. [link]